關於「Stringtie merge」標籤，搜尋引擎有相關的訊息討論：

Stringtie Manual - Center for Computational Biology。

Running StringTie; Input files; Output files; Evaluating transcript assemblies ... In the merge mode, StringTie takes as input a list of GTF/GFF files and ...： 。

StringTie - Center for Computational Biology。

StringTie is a fast and highly efficient assembler of RNA-Seq alignments into ... fixed an issue with --merge sometimes incorrectly processing the order of ...： 。

TransBorrow: genome-guided transcriptome assembly by borrowing ...。

In this study, we also compared with StringTie-merge and TACO by taking the ... Savich GL, Shah S, Aparicio S, Chiang DY, Goldenberg A, Brudno M. 2013.。

Extended transcriptome analysis reveals genome-wide lncRNA ...。

Thus, combining the analysis of gene expression, DNA methylation, ... When assembling the aligned reads into transcripts and genes, StringTie uses MSTRG to ...。

merge remove potential novel transcript isoforms if they ... - BioStars。

According to stringtie manual, in the merge option: If the -G option (reference annotation) is provided, StringTie will assemble the ...Error using stringtie merge - BiostarsStringtie --merge and gtf_list.txt issue - BiostarsStringtie not find the merged gtf reference - BiostarsStringTie's merge function - BioStarswww.biostars.org 的其他相關資訊： 。

Cloud accelerated alignment and assembly of full-length single-cell ...。

2019年12月30日 · In the merging stage, the transcripts are first written into an annotation file, followed by execution of StringTie in GTF merge mode using ...。

Leveraging multiple transcriptome assembly methods for improved ...。

2017年12月21日 · CuffMerge and StringTie-merge perform a meta-assembly of transcript structures, ... set out in the Iso-Seq method (http://goo.gl/1Vo3Sd).。

Cloud accelerated alignment and assembly of full ... - BMC Genomics。

2019年12月30日 · However, StringTie merge does not seem to correctly remove these ... Fuccillo MV, Földy C, Gökce Ö, Rothwell PE, Sun GL, Malenka RC, ...。

Partitioning of gene expression among zebrafish photoreceptor ...。

2021年8月30日 · The StringTie merge mode concatenates transcript IDs of multiple genes ... Morshedian, A. & Fain, G. L. The evolution of rod photoreceptors.。

[PDF] Alternative splicing detection across different tissues in cork oak。

genome, and Cufflinks and StringTie for transcript assembly. STAR ... reference annotation using cuffmerge or stringtie –merge modes. Each final GTF.